Drosophila melanogaster RNA-seq read set (SRR1509507, SRR14197369, SRR14404397)
Run Metadata
Workflows
used by workflow
- RNA-seq analysis workflow (HISAT2, RS2) Workflow
- RNA-seq analysis workflow (Hisat2, RS1) Workflow
- RNA-seq analysis workflow (STAR, RS1) Workflow
- RNA-seq analysis workflow (STAR, RS2) Workflow
- RNA-seq analysis workflow (Salmon, RS1) Workflow
- RNA-seq analysis workflow (Salmon, RS2) Workflow
Reproducibility
access and preparation instructions
access statement
- The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. SHA-256 checksums of the exact RUN02 inputs are included with this profile.
- The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. SHA-256 checksums of the exact RUN06 inputs are included with this profile.
- The three accessions are publicly retrievable from the NCBI Sequence Read Archive. No checksum manifest and no snapshot of the exact files used for the benchmark runs is currently published, so the reads can be re-downloaded but not byte-verified against the originals.
storage location
- FONDA Kubernetes persistent storage: /workspace/data/reads (one _1.fastq.gz and one _2.fastq.gz file per accession)
upstream data source
- https://www.ebi.ac.uk/ena/browser/view/SRR14197369
- https://www.ebi.ac.uk/ena/browser/view/SRR14404397
- https://www.ebi.ac.uk/ena/browser/view/SRR1509507
- https://www.ncbi.nlm.nih.gov/sra/?term=SRR14197369
- https://www.ncbi.nlm.nih.gov/sra/?term=SRR14404397
- https://www.ncbi.nlm.nih.gov/sra/?term=SRR1509507