Drosophila melanogaster RNA-seq read set (SRR14197369)

used by workflow runs

RNA-seq analysis workflow (HISAT2, RS2) · run 2026-08-29 12:07–22:27 CEST Workflow Run
RNA-seq analysis workflow (Hisat2, RS1) · run 2026-09-01 13:38–23:06 CEST Workflow Run
RNA-seq analysis workflow (STAR, RS1) · run 2026-08-31 09:25–17:36 CEST Workflow Run
RNA-seq analysis workflow (STAR, RS2) · run 2026-09-03 06:13–11:10 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-08-28 20:35–20:58 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-09-08 19:14–19:17 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:03–11:06 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:13–11:17 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:15–11:18 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:16–11:19 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:17–11:20 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:18–11:23 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:19–11:21 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:19–11:24 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:20–11:22 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:21–11:23 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:21–11:25 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:22–11:25 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:22–11:26 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:23–11:25 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:25–11:30 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:37–11:39 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:37–11:41 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:38–11:42 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:39–11:44 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:40–11:43 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS1) · run 2026-10-20 11:41–11:47 CEST Workflow Run
RNA-seq analysis workflow (Salmon, RS2) · run 2026-09-07 22:29–22:57 CEST Workflow Run

used by workflow

RNA-seq analysis workflow (HISAT2, RS2) Workflow
RNA-seq analysis workflow (Hisat2, RS1) Workflow
RNA-seq analysis workflow (STAR, RS1) Workflow
RNA-seq analysis workflow (STAR, RS2) Workflow
RNA-seq analysis workflow (Salmon, RS1) Workflow
RNA-seq analysis workflow (Salmon, RS2) Workflow

access and preparation instructions

https://ena-docs.readthedocs.io/en/latest/retrieval/file-download.html

access statement

The public FASTQ files were resolved through ENA and staged as one _1.fastq.gz and one _2.fastq.gz file per accession.
The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. SHA-256 checksums of the exact RUN02 inputs are included with this profile.
The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. SHA-256 checksums of the exact RUN06 inputs are included with this profile.
The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. The exact bytes staged on the shared PVC are the same read set used by the sibling A2 RNA-seq RS1 profiles.
The public FASTQ files were resolved through the ENA Portal API and downloaded resumably from ENA. The exact files were staged on the isolated STAR RS1 run volume.
The three accessions are publicly retrievable from the NCBI Sequence Read Archive. No checksum manifest and no snapshot of the exact files used for the benchmark runs is currently published, so the reads can be re-downloaded but not byte-verified against the originals.

storage location

FONDA Kubernetes PVC rnaseq-pvc, mounted at /workspace/data/reads
FONDA Kubernetes PVC rnaseq-pvc, mounted read-only at /input/data/reads
FONDA Kubernetes persistent storage: /workspace/data/reads (one _1.fastq.gz and one _2.fastq.gz file per accession)
FONDA Kubernetes persistent storage: /workspace/ninon/data/small_droso

upstream data source