RNA-seq analysis workflow (HISAT2, RS2)
Workflow
stage mix per run
One column per run, in chronological order, split by each stage's share of the CPU time of all its stages. The four largest stages have their own colour; the rest are grouped. Hover a column for values; click to open the run.
Overview
purpose
- This workflow analyzes RNA-seq data from Drosophila melanogaster to identify active genes and measure their activity levels.
FONDA Responsible researcher
- Ninon De Mecquenem Alumni
application domain
- Bioinformatics Application domain
subproject
Run Metadata
workflow runs
Reproducibility
workflow code link
input datasets used
trace types
- Nextflow trace, execution report, timeline, and execution logs
trace data format
- TSV, HTML, and plain text
Execution Environment
workflow engine
- Nextflow Workflow Engine
language
compute cluster
- FONDA Cluster Compute Cluster
backend
- Kubernetes Backend