RNA-seq analysis workflow (Salmon, RS1) Workflow

FONDA Responsible researcher

Ninon De Mecquenem Alumni

application domain

Bioinformatics Application domain

subproject

A2: Energy-Aware Optimization of Workflows in Bioinformatics Subproject

workflow runs

RNA-seq analysis workflow (Salmon, RS1) · run 2026-08-28 20:35–20:58 CEST Workflow Run

workflow code link

https://github.com/Nine-s/nextflow_RS1_salmon

input datasets used

Drosophila melanogaster RNA-seq read set (SRR1509507, SRR14197369, SRR14404397)
Drosophila melanogaster reference genome, annotation and cDNA (Ensembl BDGP6.32, release 106)

trace types

Nextflow trace, execution report, timeline, and execution logs

trace data format

TSV, HTML, and plain text

workflow engine

Nextflow Workflow Engine

language

compute cluster

FONDA Kubernetes Cluster Compute Cluster

backend

Kubernetes Backend