RNA-seq analysis workflow (Salmon, RS2) Workflow

FONDA Responsible researcher

Ninon De Mecquenem Alumni

application domain

Bioinformatics Application domain

subproject

A2: Energy-Aware Optimization of Workflows in Bioinformatics Subproject

workflow code link

https://github.com/Nine-s/nextflow_RS2_salmon

input datasets used

Drosophila melanogaster RNA-seq read set (SRR1509507, SRR14197369, SRR14404397)
Drosophila melanogaster reference genome, annotation and cDNA (Ensembl BDGP6.32, release 106)

workflow engine

Nextflow Workflow Engine

language