Long-term vegetation dynamics in the Mediterranean (nf-core) · run 2026-10-18 00:09–00:13 CEST Workflow Run uri icon

start time

  • October 18, 2026 12:09 AM

end time

  • October 18, 2026 12:13 AM

duration (s)

  • 224

duration time calculation method

  • Slurm ElapsedRaw of the job (start to end). Display timestamps use Europe/Berlin.

run status

  • Succeeded

CPU efficiency (%)

  • 60.4

data read (GB)

  • 17.0479583232

data written (GB)

  • 19.92327954432

CPU time (s)

  • 1081.552

CPU time calculation method

  • Slurm TotalCPU of the job (user + system CPU time of all steps); 8 CPUs allocated of 256 node CPUs.

task count

  • 280

peak memory (GB)

  • 2.82970112

GPU usage status

  • CPU-only job

memory calculation method

  • Peak memory: the largest resident memory (Slurm MaxRSS) of any job step, converted from bytes to gigabytes. No average memory: Slurm does not record memory use over time.

energy consumed (kWh)

  • 0.002356899696348062

energy measurement coverage

  • 5.3% of the node (shared, estimate)

node power average (W)

  • 709.0

node power maximum (W)

  • 758.0

node sleeping idle power (W)

  • 300.0

node awake idle power (W)

  • 398.0

carbon emission (kg CO2e)

  • 0.0008579114894706946

carbon intensity (kg CO2e/kWh)

  • 0.364

energy metric source

  • Slurm acct_gather_energy/ipmi; Prometheus node_exporter and ipmi_exporter on the compute node

energy calculation method

  • Node energy: Slurm acct_gather_energy/ipmi ConsumedEnergyRaw, 160396 J over the job (224 s, whole node). Job share = job CPU time 1081.6 s / CPU time of all processes on the node in the same interval 20445.5 s (node_exporter node_cpu_seconds_total, all modes except idle and iowait; 205 samples about every 1.1 s, covering 99% of the job) = 0.0529. Job energy = 160396 J x 0.0529 = 8485 J, converted to kilowatt-hours (1 kWh = 3,600,000 J): 0.002357 kWh. Single node hpc-cms01-005 (HPC@HU), shared with other jobs. Energy is an estimate: the job's CPU-time share of the measured whole-node energy. Idle and other node power is distributed by CPU time; cooling and network are excluded.

carbon calculation method

  • Time-matched: the run's energy 0.002357 kWh x the 15-minute carbon intensity of the grid (Electricity Maps, zone DE, lifecycle, flow-traced) in the quarter-hours the run used, weighted by the run's energy in each quarter-hour (split by power readings; 2026-10-17 22:00 UTC 364 g/kWh x 100.0%) = 364.0 g/kWh, so 0.86 g CO2e. Window start and end are Europe/Berlin times. Recalculated on 2026-11-07: replaces the earlier value 0.93 g CO2e (394.0 g/kWh, Electricity Maps).

idle power method

  • Node hpc-cms01-005 saves energy when nothing runs: its idle processor cores sleep (low-power states), while the node itself stays on and takes new jobs at once. Sleeping idle power: 300 W, the median IPMI power of the node in the cluster monitoring (Prometheus, a reading every 5 s) over the 30 days up to 2026-10-30, counting only times when nothing had run on the node for at least 30 minutes (load below 0.2, both GPUs below 60 W). Awake idle power: 398 W, the average IPMI power with the whole node allocated to an empty job while its power was read once a second on the node (Slurm job 1645532, 2026-10-24, 302 readings). The readings keep the cores from sleeping, so the node draws 98 W more. No energy above idle is given for this run: the node's cores sleep when idle, and its idle power without sleep is not known. The node is assumed to have had its current power profile also on the day of the run.

workflow stages of the run

git commit

  • 7c5cb9593b80d2a3cdc8bcb14137722351644435

job name

  • rangeland-test (Slurm job 1639216, partition standard, exit code 0:0)

container image

  • docker.io/davidfrantz/force:3.7.10;
  • quay.io/biocontainers/multiqc:1.25.1--pyhdfd78af_0;
  • quay.io/nf-core/ubuntu:22.04;

code version

  • 1.0.0

trace types

  • Slurm accounting (sacct); node CPU and IPMI power samples; node hardware inventory; node IPMI temperature readings; Nextflow log; Nextflow task trace

trace data format

  • TSV and plain text

CPUs used

  • 8 of the node's 256 CPUs (hardware threads), on 4 cores of processor 1: CPUs 66-69,194-197. Two hardware threads of a core share that core, so 8 CPUs here are 4 cores of computing power.

fan speed average (rpm)

  • 7913.0

node CPU utilisation average (%)

  • 35.7

node conditions method

  • Node CPU utilisation: CPU time of all processes on the node (node_exporter, all modes except idle and iowait) / (256 CPUs x sampled time) = 35.7% (91.3 of 256 CPUs busy on average). Node power: IPMI power of the node (ipmi_exporter), 205 readings about every 1.1 s: average 709 W (over time), lowest 668 W, highest 758 W. CPU efficiency: job CPU time 1082 s / (8 allocated CPUs x 224 s) = 60.4%. CPU frequency: current frequency of the 8 CPUs the job could use (/proc/cpuinfo), 205 readings. At each reading the fastest of these CPUs is taken, because the CPUs that are working run fastest: average 3141 MHz, highest 3697 MHz. Average over all of these CPUs, including idle ones: 3090 MHz. Fan speed: IPMI fan sensors of the node (ipmi_exporter), 6 fans, 205 readings: average 7913 rpm (mean of the fans, over time), highest 8280 rpm. Data read and written: Slurm accounting MaxDiskRead and MaxDiskWrite of the job's 1 step(s): 17.048 GB read, 19.923 GB written. This is all data the job's processes read and wrote, on any file system.

workflow engine

language

  • C/C++  Language
  • R  Language

execution host

  • hpc-cms01-005

node allocatable CPU

  • 256

node allocatable memory (GB)

  • 1081.494175744

node architecture

  • x86_64; 2 x AMD EPYC 7713 64-Core Processor; 256 hardware threads

os image

  • openSUSE Leap 16.0

kernel version

  • 6.12.0-160000.36-default

backend